Trajectory Viewer
=================

.. raw:: html
    :file: _static/track.html

Trajectory viewer in `Jupyter notebook <http://jupyter.org/>`_ with `nglview <https://github.com/arose/nglview>`_

Try me
------

.. image:: images/membrane_sim_try_me.png
   :target: ngl_player.html

.. note::

    Source: Above pdb file was converted from dcd and psf files from
    http://www.ks.uiuc.edu/Training/Tutorials/ (Membrane Proteins Tutorial section)


How does the notebook look like?
--------------------------------

.. image:: ./images/ngl.png
| 
.. raw:: html
   :file: ngl_example.html

.. note:: 

    Still work in progress. Please see source code in https://github.com/arose/nglview/

    or `try this online <http://mybinder.org/repo/hainm/notebook-pytraj/>`_



Install
-------

Please check `nglview <https://github.com/arose/nglview>`_ website