How to run Jupyter notebook¶

Install¶

# if you already install python via Anaconda distribution
# https://www.continuum.io/downloads, you don't need to install jupyter notebook again.
conda install jupyter notebook

# further detail: http://jupyter.org/

Download notebook¶

wget  http://amber-md.github.io/pytraj/latest/tutorials/pca_evaluated.ipynb

Run¶

# tz2.{nc, parm7} can be downloaded from
# https://github.com/Amber-MD/pytraj/tree/master/tests/data

# or: $AMBERHOME/AmberTools/test/cpptraj/ if you are using AMBER

ipython notebook pca_evaluated.ipynb

# or use AMBER16 distribution
amber.ipython notebook pca_evaluated.ipython

Note

To create a new notebook, type ipython notebook

Example¶

See also¶

Run Jupyter notebook remotely

../_images/tutorial_autoimage.png