Disclaimer: This page is a hook for some AmberMD's projects on github.


ParmEd (docs)

Parameter/topology editor and molecular simulator

pymsmt (docs)

Python Metal Site Modeling Toolbox

pytraj (docs)

A Python package for interactive data analysis for molecular dynamics simulations

pymdgx (docs)

Python bindings to mdgx

cpptraj (docs)

A program designed to load and analyze molecular dynamics trajectories and relevant data sets derived from their analysis

pysander (docs)

Python bindings to sander API

map-mpi (docs)

Very simple misc package for embarrassing parallelization for beginner